Documentation for package ‘TraMineR’ version 2.2-10
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| TraMineR-package | Trajectory Miner: Sequence Analysis Toolkit |
-- A --
| actcal | Example data set: Activity calendar from the Swiss Household Panel |
| actcal.tse | Example data set: Activity calendar from the Swiss Household Panel (time stamped event format) |
| alphabet | Get or set the alphabet of a state or event sequence object |
| alphabet<- | Get or set the alphabet of a state or event sequence object |
-- B --
| bfpdata20 | Example data set: First 20 biofam sequences in SPELL form |
| bfspell | Example data set: First 20 biofam sequences in SPELL form |
| bfspell20 | Example data set: First 20 biofam sequences in SPELL form |
| biofam | Example data set: Family life states from the Swiss Household Panel biographical survey |
-- C --
| cpal | Get or set the color palette of a sequence object |
| cpal<- | Get or set the color palette of a sequence object |
-- D --
| dissassoc | Analysis of discrepancy from dissimilarity measures |
| disscenter | Compute distances to the center of a group |
| dissdomassoc | Domain association measures |
| dissmergegroups | Merging groups by minimizing loss of partition quality. |
| dissmfacw | Multi-factor ANOVA from a dissimilarity matrix |
| dissrep | Extracting sets of representative objects using a dissimilarity matrix |
| dissrf | Relative Frequency Groups. |
| disstree | Dissimilarity Tree |
| disstree.assign | Assign rules to profiles provided |
| disstree.get.rules | Tree classification rules |
| disstree2dot | Graphical representation of a dissimilarity tree |
| disstree2dotp | Graphical representation of a dissimilarity tree |
| disstreedisplay | Graphical rendering of a sequence regression tree |
| disstreeleaf | Terminal node membership |
| dissvar | Dissimilarity based discrepancy |
-- E --
| ex1 | Example data set with missing values and weights |
| ex2 | Example data sets with weighted and unweighted sequence data |
| ex2.unweighted | Example data sets with weighted and unweighted sequence data |
| ex2.weighted | Example data sets with weighted and unweighted sequence data |
-- F --
| famform | Example data set: sequences of family formation |
-- G --
| gower_matrix | Multi-factor ANOVA from a dissimilarity matrix |
-- H --
| hist.dissassoc | Analysis of discrepancy from dissimilarity measures |
-- I --
| is.stslist | Test if is a proper state sequence (stslist) object |
| is.subseqelist | Searching for frequent subsequences |
-- M --
| mvad | Example data set: Transition from school to work |
-- P --
| plot.eseq | Parallel coordinate plot for sequence data |
| plot.seqalign | Computation details about a pairwise alignment |
| plot.seqdiff | Plotting a seqdiff object. |
| plot.seqelist | Parallel coordinate plot for sequence data |
| plot.seqrf | Plot method for seqrf objects of relative frequency groups of sequences. |
| plot.stslist | Plot method for state sequence objects |
| plot.stslist.freq | Plot method for sequence frequency tables |
| plot.stslist.meant | Plot method for objects produced by the seqmeant function |
| plot.stslist.modst | Plot method for modal state sequences |
| plot.stslist.rep | Plot method for representative sequence sets |
| plot.stslist.statd | Plot method for objects produced by the seqstatd function |
| plot.subseqelist | Plot frequencies of subsequences |
| plot.subseqelistchisq | Plot discriminant subsequences |
| print.dissassoc | Analysis of discrepancy from dissimilarity measures |
| print.dissmultifactor | Multi-factor ANOVA from a dissimilarity matrix |
| print.dissrf | Relative Frequency Groups. |
| print.disstree | Dissimilarity Tree |
| print.sdomassoc | Measures of association between domains of sequence data |
| print.seqalign | Computation details about a pairwise alignment |
| print.seqdiff | Position-wise discrepancy analysis between groups of sequences |
| print.seqeconstraint | Setting time constraints and the counting method |
| print.seqidegrad | Degradation, Precarity, and Insecurity indexes |
| print.seqivardur | Variance of spell durations in individual sequences |
| print.seqprec | Degradation, Precarity, and Insecurity indexes |
| print.seqrf | Relative Frequency Groups. |
| print.stslist | Print method for state sequence objects |
| print.stslist.freq | Frequency table of the sequences |
| print.subseqelist | Searching for frequent subsequences |
-- R --
| rbind.stslist | Create a state sequence object |
| read.tda.mdist | Read a distance matrix produced by TDA. |
| recodef | Recoding state sequence objects and factors |
-- S --
| seqalign | Computation details about a pairwise alignment |
| seqcomp | Compare two state sequences |
| seqconc | Concatenate vectors of states or events into a character string |
| seqcost | Generate substitution and indel costs |
| seqdecomp | Convert a character string into a vector of states or events |
| seqdef | Create a state sequence object |
| seqdHplot | Plot state sequence objects |
| seqdiff | Position-wise discrepancy analysis between groups of sequences |
| seqdim | Dimension of a set of sequences |
| seqdist | Distances (dissimilarities) between sequences |
| seqdistmc | Multidomain sequences |
| seqdomassoc | Measures of association between domains of sequence data |
| seqdplot | Plot state sequence objects |
| seqdss | Extract sequences of distinct successive states |
| seqdur | Extract state durations from a sequence object. |
| seqeapplysub | Checking for the presence of given event subsequences |
| seqecmpgroup | Identifying discriminating subsequences |
| seqeconstraint | Setting time constraints and the counting method |
| seqecontain | Check if sequence contains events |
| seqecreate | Create event sequence objects. |
| seqefsub | Searching for frequent subsequences |
| seqeid | Retrieve unique ids from an event sequence object. |
| seqelength | Lengths of event sequences |
| seqelength<- | Lengths of event sequences |
| seqetm | Create a transition-definition matrix |
| seqeweight | Setting or retrieving weights of an event sequence object. |
| seqeweight<- | Setting or retrieving weights of an event sequence object. |
| seqfind | Indexes of state sequence(s) x in state sequence object y |
| seqformat | Conversion between sequence formats |
| seqfplot | Plot state sequence objects |
| seqfpos | Search for the first occurrence of a given element in a sequence |
| seqfposend | End of first spell in given state |
| seqgen | Random sequences generation |
| seqhasmiss | Count and identification of sequences with nr and void missings |
| seqHtplot | Plot state sequence objects |
| seqibad | Badness index |
| seqici | Complexity index of individual sequences |
| seqidegrad | Degradation, Precarity, and Insecurity indexes |
| seqient | Within sequence entropies |
| seqindic | Sequence indicators |
| seqinsecurity | Degradation, Precarity, and Insecurity indexes |
| seqintegr | Integrative potential |
| seqintegration | Integrative potential |
| seqIplot | Plot state sequence objects |
| seqiplot | Plot state sequence objects |
| seqipos | Indicators for binary sequences of positive and negative states. |
| seqistatd | State frequencies in each individual sequence |
| seqivardur | Variance of spell durations in individual sequences |
| seqivolatility | Volatility of individual state sequences |
| seqlegend | Plot a legend for the states in a sequence object |
| seqlength | Sequence length |
| seqlength.align | Align sequence length across domains |
| seqLLCP | Compute the length of the longest common prefix of two sequences |
| seqLLCS | Compute the length of the longest common subsequence of two sequences |
| seqlogp | Logarithm of the probabilities of state sequences |
| seqmaintokens | Indexes of most frequent tokens |
| seqMD | Multidomain sequences |
| seqmeant | Mean durations in each state |
| seqmodst | Sequence of modal states |
| seqmpos | Number of matching positions between two sequences. |
| seqmsplot | Plot state sequence objects |
| seqmtplot | Plot state sequence objects |
| seqnum | Transform into a sequence object with numerical alphabet. |
| seqpcfilter | Parallel coordinate plot for sequence data |
| seqpcplot | Parallel coordinate plot for sequence data |
| seqplot | Plot state sequence objects |
| seqplotMD | Plot multidomain state sequences |
| seqpm | Find substring patterns in sequences |
| seqprecarity | Degradation, Precarity, and Insecurity indexes |
| seqprecorr | Degradation, Precarity, and Insecurity indexes |
| seqprecstart | State precarity |
| seqrecode | Recoding state sequence objects and factors |
| seqrep | Extracting sets of representative sequences |
| seqrf | Relative Frequency Groups. |
| seqrfplot | Plot state sequence objects |
| seqrplot | Plot state sequence objects |
| seqsep | Adds separators to sequences stored as character string |
| seqST | Sequences turbulence |
| seqstatd | Sequence of transversal state distributions and their entropies |
| seqstatf | State frequencies in the whole sequence data set |
| seqstatl | List of distinct states or events (alphabet) in a sequence data set. |
| seqsubm | Generate substitution and indel costs |
| seqsubsn | Number of distinct subsequences in a sequence. |
| seqtab | Frequency table of the sequences |
| seqtransn | Number of transitions in a sequence |
| seqtrate | Compute transition rates between states |
| seqtree | Tree structured analysis of a state sequence object. |
| seqtree2dot | Graphical representation of a dissimilarity tree |
| seqtreedisplay | Graphical rendering of a sequence regression tree |
| stlab | Get or set the state labels of a sequence object |
| stlab<- | Get or set the state labels of a sequence object |
| summary.ddomassoc | Domain association measures |
| summary.dissrf | Relative Frequency Groups. |
| summary.seqrf | Relative Frequency Groups. |
| summary.stslist | Create a state sequence object |
-- T --
| TraMineR | Trajectory Miner: Sequence Analysis Toolkit |
| TraMineR.check.depr.args | Checking and managing deprecated arguments |
| TraMineRInternalLayout | Access to TraMineR internal functions |
| TraMineRInternalLegend | Access to TraMineR internal functions |
| TraMineRInternalNodeInit | Access to TraMineR internal functions |
| TraMineRInternalSeqeage | Access to TraMineR internal functions |
| TraMineRInternalSeqgbar | Access to TraMineR internal functions |
| TraMineRInternalSplitInit | Access to TraMineR internal functions |
| TraMineRInternalWeightedInertiaDist | Access to TraMineR internal functions |
